Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
Frontal cortex
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
middle frontal area 46
sex
female
dev stage
adult
age
86 year
donor ID
ENCDO845GYA
lab
Bradley Bernstein, Broad
source
Rush University

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
28825474
Reads aligned (%)
98.4
Duplicates removed (%)
7.1
Number of peaks
38454 (qval < 1E-05)

hg19

Number of total reads
28825474
Reads aligned (%)
97.6
Duplicates removed (%)
7.9
Number of peaks
38305 (qval < 1E-05)

Base call quality data from DBCLS SRA